Package: NU.Learning 1.5

NU.Learning: Nonparametric and Unsupervised Learning from Cross-Sectional Observational Data

Especially when cross-sectional data are observational, effects of treatment selection bias and confounding are best revealed by using Nonparametric and Unsupervised methods to "Design" the analysis of the given data ...rather than the collection of "designed data". Specifically, the "effect-size distribution" that best quantifies a potentially causal relationship between a numeric y-Outcome variable and either a binary t-Treatment or continuous e-Exposure variable needs to consist of BLOCKS of relatively well-matched experimental units (e.g. patients) that have the most similar X-confounder characteristics. Since our NU Learning approach will form BLOCKS by "clustering" experimental units in confounder X-space, the implicit statistical model for learning is One-Way ANOVA. Within Block measures of effect-size are then either [a] LOCAL Treatment Differences (LTDs) between Within-Cluster y-Outcome Means ("new" minus "control") when treatment choice is Binary or else [b] LOCAL Rank Correlations (LRCs) when the e-Exposure variable is numeric with (hopefully many) more than two levels. An Instrumental Variable (IV) method is also provided so that Local Average y-Outcomes (LAOs) within BLOCKS may also contribute information for effect-size inferences when X-Covariates are assumed to influence Treatment choice or Exposure level but otherwise have no direct effects on y-Outcomes. Finally, a "Most-Like-Me" function provides histograms of effect-size distributions to aid Doctor-Patient (or Researcher-Society) communications about Heterogeneous Outcomes. Obenchain and Young (2013) <doi:10.1080/15598608.2013.772821>; Obenchain, Young and Krstic (2019) <doi:10.1016/j.yrtph.2019.104418>.

Authors:Bob Obenchain [aut, cre], Stan Young [ctb]

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# Install 'NU.Learning' in R:
install.packages('NU.Learning', repos = c('https://rlobenchain.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • pci15k - Six-month Survival, Cardiac cost and Baseline Covariate data for 15,487 PCI patients.
  • pmdata - Particulate Matter, Mortality and Other data for 2980 US Counties
  • radon - Radon exposure and lung cancer mortality data for 2,881 US counties in 46 States.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

11 exports 0.09 score 2 dependencies 2 scripts 130 downloads

Last updated 12 months agofrom:acedfecc39. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 02 2024
R-4.5-winOKSep 02 2024
R-4.5-linuxOKSep 02 2024
R-4.4-winOKSep 02 2024
R-4.4-macOKSep 02 2024
R-4.3-winOKSep 02 2024
R-4.3-macOKSep 02 2024

Exports:confirmivadjKSpermlrcaggltdaggmlmemlme.statsNUclusterNUcompareNUsetupreveal.data

Dependencies:clusterlattice

Readme and manuals

Help Manual

Help pageTopics
NU.Learning: Nonparametric and Unsupervised Adjustment for Bias and ConfoundingNU.Learning-package
Confirm that Clustering in Covariate X-space yields an "adjusted" LTD/LRC effect-size Distributionconfirm
Instrumental Variable LAO Fitting and Smoothingivadj
Simulate a p-value for the significance of the Kolmogorov-Smirnov D-statistic from confirm().KSperm
Calculate the observed Distribution of LRCs in NU.Learninglrcagg
Calculate the Observed Distribution of LTDs in NU.Learningltdagg
Create a <<Most-Like-Me>> data.frame for a specified X-Confounder vector: xvecmlme
Print Summary Statistics for One or More "Most-Like-Me" Histogram Pairs.mlme.stats
Hierarchical Clustering of experimental units (such as patients) in X-covariate SpaceNUcluster
Display NU Sensitivity Graphic for help in choice of K = Number of ClustersNUcompare
Specify KEY parameters used in NU.Learning to "design" analyses of Observational Data.NUsetup
Six-month Survival, Cardiac cost and Baseline Covariate data for 15,487 PCI patients.pci15k
Display an Instrumental Variable (LAO) plot with Linear and smooth.spline Fitsplot.ivadj
Display Visualizations of an Observed LRC Distribution in NU.Learningplot.lrcagg
Display Visualizations of an Observed LTD Distribution in NU.Learningplot.ltdagg
Display a Pair (or Pairs) of Histograms showing LOCAL effect-sizes for Patients "Most-Like-Me".plot.mlme
Particulate Matter, Mortality and Other data for 2980 US Countiespmdata
Print Summary Statistics on Local effect-size Estimates for Patients "Most-Like-Me".print.mlme
Radon exposure and lung cancer mortality data for 2,881 US counties in 46 States.radon
Create a data.frame for use in Prediction of a LTD/LRC effect-size Distributionreveal.data